com.banda.chemistry.business

Class AcReactionSetConverter

java.lang.Object

com.banda.chemistry.business.AcReactionSetConverter

Direct Known Subclasses:

AcMichaelisMentenToMassActionRSConverter

public abstract class AcReactionSetConverter
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected ArtificialChemistryUtil	acUtil
protected AcReplicator	replicator

Constructor Summary

Constructors

Constructor and Description
AcReactionSetConverter(AcReactionSet inputReactionSet)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addReactions(Collection<AcReaction> newReactions, AcReactionGroup originalReactionGroup)
protected void	addSpecies(Collection<AcReaction> newReactions)
AcReactionSet	convert()
protected abstract Collection<AcReaction>	convert(AcReaction inputReaction)
protected Collection<AcReaction>	getInputReactions()
protected AcReactionSet	getInputReactionSet()
protected AcSpeciesSet	getInputSpeciesSet()
protected AcSpeciesSet	getOutputSpeciesSet()
protected abstract boolean	isConvertible(AcReaction inputReaction)
protected void	removeReaction(AcReaction reaction)
protected void	validate()
protected abstract void	validate(AcReaction reaction)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

acUtil

protected final ArtificialChemistryUtil acUtil

replicator

protected final AcReplicator replicator

Constructor Detail

AcReactionSetConverter

public AcReactionSetConverter(AcReactionSet inputReactionSet)

Method Detail

validate

protected void validate()

convert

public AcReactionSet convert()

addReactions

protected void addReactions(Collection<AcReaction> newReactions,
                AcReactionGroup originalReactionGroup)

addSpecies

protected void addSpecies(Collection<AcReaction> newReactions)

removeReaction

protected void removeReaction(AcReaction reaction)

validate

protected abstract void validate(AcReaction reaction)

convert

protected abstract Collection<AcReaction> convert(AcReaction inputReaction)

isConvertible

protected abstract boolean isConvertible(AcReaction inputReaction)

getOutputSpeciesSet

protected AcSpeciesSet getOutputSpeciesSet()

getInputReactionSet

protected AcReactionSet getInputReactionSet()

getInputReactions

protected Collection<AcReaction> getInputReactions()

getInputSpeciesSet

protected AcSpeciesSet getInputSpeciesSet()