com.banda.chemistry.business.factory

Class AcReactionSetFactory

java.lang.Object

com.banda.chemistry.business.factory.AcReactionSetFactory

public class AcReactionSetFactory
extends Object

Method Summary

Methods

Modifier and Type	Method and Description
AcReactionSet	createComplexRS(Collection<AcSpecies> species, AcReactionSetConstraints reactionSetConstraints, AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)
AcReactionSet	createComplexRS(Collection<AcSpecies> allowedReactantSpecies, Collection<AcSpecies> allowedProductSpecies, Collection<AcSpecies> allowedCatalystSpecies, Collection<AcSpecies> allowedInhibitorSpecies, AcReactionSetConstraints reactionSetConstraints, AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)
AcReactionSet	createComplexRS(Map<AcSpeciesAssociationType,Collection<AcSpecies>> assocTypeAllowedSpeciesMap, AcReactionSetConstraints reactionSetConstraints, AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)
AcReactionSet	createDNAStrandRS(AcDNAStrandSpec spec, AcDNAStrandSpeciesSet speciesSet)
AcReactionSet	createOutputFeedbackRS(AcSpeciesSet speciesSet)
AcReactionSet	createRandomReactionSymmetricRS(AcSymmetricSpec spec, AcSpeciesSet speciesSet)
AcReactionSet	createRandomRS(int reactionsNumber, int reactantsNumber, int productsNumber, int catalystsNumber, int inhibitorsNumber, AcSpeciesSet speciesSet, AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)
static AcReactionSetFactory	getInstance()
AcReactionSet	mergeReactionSets(AcReactionSet[] reactionSets)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static AcReactionSetFactory getInstance()

createDNAStrandRS

public AcReactionSet createDNAStrandRS(AcDNAStrandSpec spec,
                              AcDNAStrandSpeciesSet speciesSet)

createComplexRS

public AcReactionSet createComplexRS(Collection<AcSpecies> species,
                            AcReactionSetConstraints reactionSetConstraints,
                            AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)

createComplexRS

public AcReactionSet createComplexRS(Collection<AcSpecies> allowedReactantSpecies,
                            Collection<AcSpecies> allowedProductSpecies,
                            Collection<AcSpecies> allowedCatalystSpecies,
                            Collection<AcSpecies> allowedInhibitorSpecies,
                            AcReactionSetConstraints reactionSetConstraints,
                            AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)

createComplexRS

public AcReactionSet createComplexRS(Map<AcSpeciesAssociationType,Collection<AcSpecies>> assocTypeAllowedSpeciesMap,
                            AcReactionSetConstraints reactionSetConstraints,
                            AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)

createRandomRS

public AcReactionSet createRandomRS(int reactionsNumber,
                           int reactantsNumber,
                           int productsNumber,
                           int catalystsNumber,
                           int inhibitorsNumber,
                           AcSpeciesSet speciesSet,
                           AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)

createRandomReactionSymmetricRS

public AcReactionSet createRandomReactionSymmetricRS(AcSymmetricSpec spec,
                                            AcSpeciesSet speciesSet)

createOutputFeedbackRS

public AcReactionSet createOutputFeedbackRS(AcSpeciesSet speciesSet)

mergeReactionSets

public AcReactionSet mergeReactionSets(AcReactionSet[] reactionSets)