com.banda.chemistry.domain

Class AcDNAStrandSpeciesSet

java.lang.Object

com.banda.core.domain.DomainObject<Long>

com.banda.core.domain.TechnicalDomainObject

com.banda.chemistry.domain.AcVariableSet<AcSpecies>

com.banda.chemistry.domain.AcSpeciesSet

com.banda.chemistry.domain.AcDNAStrandSpeciesSet

All Implemented Interfaces:

AcVariableGroupIF<AcSpecies>, AcVariableSetIF<AcSpecies>, KeyHolder<Long>, Serializable

public class AcDNAStrandSpeciesSet
extends AcSpeciesSet

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class com.banda.core.domain.DomainObject

DomainObject.DomainObjectKeyComparator<K extends Serializable & Comparable<K>>

Constructor Summary

Constructors

Constructor and Description
AcDNAStrandSpeciesSet()

Method Summary

Methods

Modifier and Type	Method and Description
void	addFullDoubleStrand(AcCompositeSpecies fullDoubleStrand)
void	addLowerStrand(AcSpecies lowerStrand)
void	addPartialDoubleStrand(AcCompositeSpecies partialDoubleStrand)
void	addUpperStrand(AcSpecies upperStrand)
Collection<AcCompositeSpecies>	getFullDoubleStrands()
Collection<AcSpecies>	getLowerStrands()
Collection<AcCompositeSpecies>	getPartialDoubleStrands()
Collection<AcSpecies>	getUpperStrands()
void	setFullDoubleStrands(Collection<AcCompositeSpecies> fullDoubleStrands)
void	setLowerStrands(Collection<AcSpecies> lowerStrands)
void	setPartialDoubleStrands(Collection<AcCompositeSpecies> partialDoubleStrands)
void	setUpperStrands(Collection<AcSpecies> upperStrands)

Methods inherited from class com.banda.chemistry.domain.AcSpeciesSet

addSpeciesToGroup, getInternalSpecies, getLevel, getNextVarSequenceNum, getNonInputFeedbackSpecies, getNonInternalSpecies, getOwnAndInheritedSpecies, getOwnAndInheritedVariables, getParameterSet, getParentSpeciesSet, getSpecies, getSpeciesGroup, getSpeciesGroupMap, getSpeciesNumber, getVariablesNumber, getVarSequenceNum, hasParentSpeciesSet, hasSpecies, initVarSequenceNum, main, setParameterSet, setParentSpeciesSet, setSpeciesGroupMap, setVarSequenceNum

Methods inherited from class com.banda.chemistry.domain.AcVariableSet

addVariable, addVariables, containsVariable, getCreatedBy, getCreateTime, getName, getOwnAndInheritedVariablesSorted, getVariables, getVariablesSorted, hasOwnVariables, initVariables, removeVariable, setCreatedBy, setCreateTime, setName, setVariables, toString

Methods inherited from class com.banda.core.domain.TechnicalDomainObject

getId, getKey, getVersion, setId, setKey, setVersion

Methods inherited from class com.banda.core.domain.DomainObject

copyFrom, equals, hashCode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AcDNAStrandSpeciesSet

public AcDNAStrandSpeciesSet()

Method Detail

getUpperStrands

public Collection<AcSpecies> getUpperStrands()

setUpperStrands

public void setUpperStrands(Collection<AcSpecies> upperStrands)

getLowerStrands

public Collection<AcSpecies> getLowerStrands()

setLowerStrands

public void setLowerStrands(Collection<AcSpecies> lowerStrands)

getFullDoubleStrands

public Collection<AcCompositeSpecies> getFullDoubleStrands()

setFullDoubleStrands

public void setFullDoubleStrands(Collection<AcCompositeSpecies> fullDoubleStrands)

getPartialDoubleStrands

public Collection<AcCompositeSpecies> getPartialDoubleStrands()

setPartialDoubleStrands

public void setPartialDoubleStrands(Collection<AcCompositeSpecies> partialDoubleStrands)

addUpperStrand

public void addUpperStrand(AcSpecies upperStrand)

addLowerStrand

public void addLowerStrand(AcSpecies lowerStrand)

addFullDoubleStrand

public void addFullDoubleStrand(AcCompositeSpecies fullDoubleStrand)

addPartialDoubleStrand

public void addPartialDoubleStrand(AcCompositeSpecies partialDoubleStrand)