Uses of Class
com.banda.chemistry.domain.AcCompartment

Packages that use AcCompartment

Package	Description
com.banda.chemistry.business
com.banda.chemistry.business.factory
com.banda.chemistry.domain

Uses of AcCompartment in com.banda.chemistry.business

Fields in com.banda.chemistry.business with type parameters of type AcCompartment

Modifier and Type	Field and Description
static PairComparator<AcCompartment,AcSpecies>	ArtificialChemistryUtil.compartmentSpeciesComparator

Methods in com.banda.chemistry.business that return AcCompartment

Modifier and Type	Method and Description
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithReactionSet(AcCompartment compartment)

Methods in com.banda.chemistry.business with parameters of type AcCompartment

Modifier and Type	Method and Description
void	AcReplicator.cloneChannels(AcCompartment compartment, AcCompartment compartmentClone, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithReactionSet(AcCompartment compartment)
void	AcReplicator.cloneSubChannelGroups(AcCompartment compartment, AcCompartment compartmentClone, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)
int	AcCompartmentDepthComparator.compare(AcCompartment compartment1, AcCompartment compartment2)
Collection<ValueBound<Double>>	AcRateConstantUtil.getRateConstantBounds(AcCompartment compartment, Map<AcRateConstantType,ValueBound<Double>> rateConstantTypeBoundMap, AcReaction.ReactionDirection reactionDirection, Collection<AcReaction> reactionsToOmit, Collection<AcReactionGroup> reactionGroupsToOmit)
void	AcReplicator.nullIdAndVersionRecursively(AcCompartment compartment)
void	AcRateConstantUtil.setRateConstants(AcCompartment compartment, Double[] rateAndPermeabilityConstants, AcReaction.ReactionDirection direction, Collection<AcReaction> reactionsToOmit, Collection<AcReactionGroup> reactionGroupsToOmit)
void	AcRateConstantUtil.setRateConstantsFromString(String rateConstantsString, AcCompartment compartment, AcReaction.ReactionDirection reactionDirection, Collection<AcReaction> reactionsToOmit, Collection<AcReactionGroup> reactionGroupsToOmit)

Method parameters in com.banda.chemistry.business with type arguments of type AcCompartment

Modifier and Type	Method and Description
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)
AcCompartment	AcReplicator.cloneCompartmentWithChannelsRecursively(AcCompartment compartment, Map<AcCompartment,AcCompartment> compartmentCloneMap, Map<AcCompartmentChannel,AcCompartmentChannel> channelCloneMap)

Uses of AcCompartment in com.banda.chemistry.business.factory

Methods in com.banda.chemistry.business.factory that return AcCompartment

Modifier and Type	Method and Description
AcCompartment	AcCompartmentFactory.createInstance(ArtificialChemistrySpec spec, AcSimulationConfig config)

Uses of AcCompartment in com.banda.chemistry.domain

Methods in com.banda.chemistry.domain that return AcCompartment

Modifier and Type	Method and Description
AcCompartment	AcMultiRunAnalysisResult.getCompartment()
AcCompartment	AcCompartmentChannelGroup.getCompartment()
AcCompartment	AcEvaluatedPerformance.getCompartment()
AcCompartment	AcCompartmentChannel.getCompartment()
AcCompartment	AcCompartmentAssociation.getParentCompartment()
AcCompartment	ArtificialChemistry.getSkinCompartment()
AcCompartment	AcCompartmentAssociation.getSubCompartment()

Methods in com.banda.chemistry.domain that return types with arguments of type AcCompartment

Modifier and Type	Method and Description
ComponentRunTrace<Double,Pair<AcCompartment,AcSpecies>>	AcTranslatedRun.getAcRunTrace()
Collection<AcCompartment>	AcCompartment.getParentCompartments()
Collection<AcCompartment>	AcCompartment.getSubCompartments()

Methods in com.banda.chemistry.domain with parameters of type AcCompartment

Modifier and Type	Method and Description
void	AcCompartment.addSubCompartment(AcCompartment subCompartment)
void	AcCompartment.removeParentCompartment(AcCompartment parentCompartment)
void	AcCompartment.removeSubCompartment(AcCompartment subCompartment)
void	AcMultiRunAnalysisResult.setCompartment(AcCompartment compartment)
void	AcCompartmentChannelGroup.setCompartment(AcCompartment compartment)
void	AcEvaluatedPerformance.setCompartment(AcCompartment compartment)
void	AcCompartmentChannel.setCompartment(AcCompartment compartment)
void	AcCompartmentAssociation.setParentCompartment(AcCompartment parentCompartment)
void	ArtificialChemistry.setSkinCompartment(AcCompartment skinCompartment)
void	AcCompartmentAssociation.setSubCompartment(AcCompartment subCompartment)

Method parameters in com.banda.chemistry.domain with type arguments of type AcCompartment

Modifier and Type	Method and Description
void	AcTranslatedRun.setAcRunTrace(ComponentRunTrace<Double,Pair<AcCompartment,AcSpecies>> acRunTrace)