Collection<ValueBound<Double>> |
AcRateConstantUtil.getRateConstantBounds(AcCompartment compartment,
Map<AcRateConstantType,ValueBound<Double>> rateConstantTypeBoundMap,
AcReaction.ReactionDirection reactionDirection,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |
Collection<ValueBound<Double>> |
AcRateConstantUtil.getRateConstantBounds(AcReaction reaction,
Map<AcRateConstantType,ValueBound<Double>> rateConstantTypeBoundMap,
AcReaction.ReactionDirection reactionDirection) |
Collection<ValueBound<Double>> |
AcRateConstantUtil.getRateConstantBounds(AcReactionSet reactionSet,
Map<AcRateConstantType,ValueBound<Double>> rateConstantTypeBoundMap,
AcReaction.ReactionDirection reactionDirection,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |
void |
AcRateConstantUtil.setRandomRateConstantsIfNotSet(AcReactionSet reactionSet,
Map<AcRateConstantType,ValueBound<Double>> rateConstantTypeBoundMap,
AcReaction.ReactionDirection reactionDirection) |
void |
AcRateConstantUtil.setRateConstants(AcCompartment compartment,
Double[] rateAndPermeabilityConstants,
AcReaction.ReactionDirection direction,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |
void |
AcRateConstantUtil.setRateConstants(AcReactionSet reactionSet,
Double[] rateConstants,
AcReaction.ReactionDirection direction,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |
void |
AcRateConstantUtil.setRateConstantsFromString(String rateConstantsString,
AcCompartment compartment,
AcReaction.ReactionDirection reactionDirection,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |
void |
AcRateConstantUtil.setRateConstantsFromString(String rateConstantsString,
AcReaction reaction,
AcReaction.ReactionDirection reactionDirection) |
void |
AcRateConstantUtil.setRateConstantsFromString(String rateConstantsString,
AcReactionSet reactionSet,
AcReaction.ReactionDirection reactionDirection,
Collection<AcReaction> reactionsToOmit,
Collection<AcReactionGroup> reactionGroupsToOmit) |