Hierarchy For All Packages

Package Hierarchies:

• com.banda.chemistry,
• com.banda.chemistry.business,
• com.banda.chemistry.business.factory,
• com.banda.chemistry.business.reactionode,
• com.banda.chemistry.domain

Class Hierarchy

• java.lang.Object
  • com.banda.chemistry.domain.AcCompartmentAssociation (implements java.lang.Comparable<T>, java.io.Serializable)
  • com.banda.chemistry.domain.AcCompartmentChannelGroup (implements java.io.Serializable)
  • com.banda.chemistry.business.AcCompartmentDepthComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.business.factory.AcCompartmentFactory
  • com.banda.chemistry.domain.AcConcentrationLevel (implements java.io.Serializable)
  • com.banda.chemistry.business.AcEvaluationBOFactory (implements java.io.Serializable)
  • com.banda.chemistry.business.AcEvaluator
  • com.banda.chemistry.business.factory.AcInteractionSeriesFactory
  • com.banda.chemistry.domain.AcInteractionVariableAssignment.AcInteractionVariableComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcItemHistory.AcItemHistoryLabelComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcItemHistory.AcItemHistoryLabelComparator2 (implements java.util.Comparator<T>)
  • com.banda.chemistry.business.AcKineticsBO
  • com.banda.chemistry.business.AcRateConstantUtil
  • com.banda.chemistry.business.reactionode.AcReactionODESolverFactory
  • com.banda.chemistry.business.AcReactionRatePerturbationBO
  • com.banda.chemistry.domain.AcReactionSetConstraints (implements java.io.Serializable)
  • com.banda.chemistry.business.AcReactionSetConverter
    • com.banda.chemistry.business.AcMichaelisMentenToMassActionRSConverter
  • com.banda.chemistry.business.factory.AcReactionSetFactory
  • com.banda.chemistry.domain.AcReactionToSpeciesConstraints (implements java.io.Serializable)
  • com.banda.chemistry.business.AcReplicator
  • com.banda.chemistry.domain.AcSimulationConfig (implements java.io.Serializable)
  • com.banda.chemistry.domain.AcSpeciesAssociation (implements java.io.Serializable)
  • com.banda.chemistry.business.AcSpeciesIndecesToStoreGroup
  • com.banda.chemistry.domain.AcSpeciesInteraction.AcSpeciesInteractionVariableComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcSpeciesReactionAssociation.AcSpeciesReactionAssociationIndexComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcSpeciesReactionAssociation.AcSpeciesReactionAssociationLabelComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcSpeciesReactionAssociation.AcSpeciesReactionAssociationOrderComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.business.factory.AcSpeciesSetFactory
  • com.banda.chemistry.domain.AcSpeciesToReactionConstraints (implements java.io.Serializable)
  • com.banda.chemistry.domain.AcTranslation.AcTranslationFromTimeComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.business.factory.AcTranslationSeriesFactory
  • com.banda.chemistry.domain.AcVariable.AcVariableIndexComparator<T> (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcVariable.AcVariableLabelComparator<T> (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.ArtificialChemistrySpec (implements java.io.Serializable)
    • com.banda.chemistry.domain.AcDNAStrandSpec
    • com.banda.chemistry.domain.AcSymmetricSpec
  • com.banda.chemistry.domain.ArtificialChemistrySpecBound (implements java.io.Serializable)
    • com.banda.chemistry.domain.AcDNAStrandSpecBound
    • com.banda.chemistry.domain.AcSymmetricSpecBound
  • com.banda.chemistry.business.ArtificialChemistryUtil
  • com.banda.chemistry.business.ChemistryRunSetting (implements java.io.Serializable)
  • com.banda.core.domain.DomainObject<KEY> (implements com.banda.core.domain.KeyHolder<KEY>, java.io.Serializable)
    • com.banda.core.domain.TechnicalDomainObject
      • com.banda.chemistry.domain.AcCompartment
      • com.banda.chemistry.domain.AcCompartmentChannel
      • com.banda.chemistry.domain.AcEvaluatedAction (implements java.lang.Comparable<T>)
      • com.banda.chemistry.domain.AcEvaluatedActionSeries
      • com.banda.chemistry.domain.AcEvaluatedPerformance
        • com.banda.chemistry.domain.AcPerturbationPerformance
        • com.banda.chemistry.domain.AcRandomRatePerformance
      • com.banda.chemistry.domain.AcEvaluatedRun
      • com.banda.chemistry.domain.AcEvaluatedSpeciesAction
      • com.banda.chemistry.domain.AcEvaluation (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcInteractionVariableAssignment (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcItemHistoriesHolder<I>
        • com.banda.chemistry.domain.AcTranslatedRun
      • com.banda.chemistry.domain.AcItemHistory<H>
        • com.banda.chemistry.domain.AcTranslationItemHistory
      • com.banda.chemistry.domain.AcRateConstantTypeBound
      • com.banda.chemistry.domain.AcReaction (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcReactionContainer
        • com.banda.chemistry.domain.AcReactionGroup
        • com.banda.chemistry.domain.AcReactionSet
      • com.banda.chemistry.domain.AcSpeciesInteraction (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcSpeciesReactionAssociation
      • com.banda.chemistry.domain.AcTranslation
      • com.banda.chemistry.domain.AcTranslationItem<T> (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcVariable<M>
        • com.banda.chemistry.domain.AcInteractionVariable
        • com.banda.chemistry.domain.AcParameter (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
        • com.banda.chemistry.domain.AcSpecies
          • com.banda.chemistry.domain.AcCompositeSpecies
        • com.banda.chemistry.domain.AcTranslationVariable
      • com.banda.chemistry.domain.AcVariableGroup<M> (implements com.banda.chemistry.domain.AcVariableGroupIF<M>)
        • com.banda.chemistry.domain.AcSpeciesGroup
      • com.banda.chemistry.domain.AcVariableSet<M> (implements com.banda.chemistry.domain.AcVariableSetIF<M>)
        • com.banda.chemistry.domain.AcParameterSet
        • com.banda.chemistry.domain.AcSpeciesSet
          • com.banda.chemistry.domain.AcDNAStrandSpeciesSet
      • com.banda.chemistry.domain.ArtificialChemistry
      • com.banda.core.domain.runnable.BaseManipulationSeries
        • com.banda.chemistry.domain.AcInteractionSeries (implements com.banda.chemistry.domain.AcVariableSetIF<M>)
        • com.banda.chemistry.domain.AcTranslationSeries (implements com.banda.chemistry.domain.AcVariableSetIF<M>)
  • com.banda.chemistry.business.FunctionEvaluatorWrapper<T,IN,OUT>
    • com.banda.chemistry.business.DoubleFunctionEvaluatorWrapper<T>
  • com.banda.math.domain.dynamics.MultiRunAnalysisResult<T> (implements java.io.Serializable)
    • com.banda.chemistry.domain.AcMultiRunAnalysisResult
  • com.banda.core.domain.runnable.StateAction (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.banda.chemistry.domain.AcInteraction
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.banda.chemistry.BndChemistryException
          • com.banda.chemistry.business.BndChemistryValidationException

Interface Hierarchy

• com.banda.chemistry.business.AcReactionConverter
• com.banda.chemistry.business.AcTranslatedRunHolder
• com.banda.chemistry.domain.AcVariableGroupIF<M>
  • com.banda.chemistry.domain.AcVariableSetIF<M>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.banda.chemistry.domain.AcCollectiveSpeciesReactionAssociationType
    • com.banda.chemistry.domain.KineticsType
    • com.banda.chemistry.domain.AcEvaluationItemState
    • com.banda.chemistry.domain.AcRateConstantType
    • com.banda.chemistry.domain.AcChannelDirection
    • com.banda.chemistry.domain.AcSpeciesType
    • com.banda.chemistry.domain.IllegalStateEventHandling
    • com.banda.chemistry.domain.AcReactionSpeciesForbiddenRedundancy
    • com.banda.chemistry.domain.AcReaction.ReactionDirection
    • com.banda.chemistry.domain.AcSpeciesAssociationType
    • com.banda.chemistry.business.MassActionType
    • com.banda.chemistry.business.factory.AcTranslationSeriesFactory.DefaultTransItemLabel