Serialized Form (banda-chemistry 0.6.0 API)

Package com.banda.chemistry
- Class com.banda.chemistry.BndChemistryException extends RuntimeException implements Serializable
Package com.banda.chemistry.business
- Class com.banda.chemistry.business.AcEvaluationBOFactory extends Object implements Serializable
  - Serialized Fields
    - functionEvaluatorFactory
```
com.banda.function.evaluator.FunctionEvaluatorFactory functionEvaluatorFactory
```
- Class com.banda.chemistry.business.AcInterpretationFactory extends Object implements Serializable
  - Serialized Fields
    - com$banda$chemistry$business$AcInterpretationFactory$$funEvaluatorFactory
```
com.banda.function.evaluator.FunctionEvaluatorFactory com$banda$chemistry$business$AcInterpretationFactory$$funEvaluatorFactory
```
- Class com.banda.chemistry.business.AcScriptFactory extends Object implements Serializable
  - Serialized Fields
    - com$banda$chemistry$business$AcScriptFactory$$funEvaluatorFactory
```
com.banda.function.evaluator.FunctionEvaluatorFactory com$banda$chemistry$business$AcScriptFactory$$funEvaluatorFactory
```
- Class com.banda.chemistry.business.BndChemistryValidationException extends BndChemistryException implements Serializable
- Class com.banda.chemistry.business.ChemistryInterpretationFactory extends Object implements Serializable
  - Serialized Fields
    - functionEvaluatorFactory
```
com.banda.function.evaluator.FunctionEvaluatorFactory functionEvaluatorFactory
```
    - acInterpretationFactory
```
com.banda.chemistry.business.AcInterpretationFactory acInterpretationFactory
```
- Class com.banda.chemistry.business.ChemistryRunnableFactory extends Object implements Serializable
  - Serialized Fields
    - functionEvaluatorFactory
```
com.banda.function.evaluator.FunctionEvaluatorFactory functionEvaluatorFactory
```
    - acScriptFactory
```
com.banda.chemistry.business.AcScriptFactory acScriptFactory
```
    - beforeAlternationTimeDiff
```
scala.Some<A> beforeAlternationTimeDiff
```
- Class com.banda.chemistry.business.ChemistryRunSetting extends Object implements Serializable
  - Serialized Fields
    - upperThresholdViolationHandling
```
IllegalStateEventHandling upperThresholdViolationHandling
```
    - zeroThresholdViolationHandling
```
IllegalStateEventHandling zeroThresholdViolationHandling
```
    - notANumberConcentrationHandling
```
IllegalStateEventHandling notANumberConcentrationHandling
```
    - storeSpeciesHistorySelectionGroup
```
Collection<E> storeSpeciesHistorySelectionGroup
```
Package com.banda.chemistry.domain
- Class com.banda.chemistry.domain.AcCompartment extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - label
```
String label
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - reactionSet
```
AcReactionSet reactionSet
```
    - parentCompartmentAssociations
```
List<E> parentCompartmentAssociations
```
    - subCompartmentAssociations
```
List<E> subCompartmentAssociations
```
    - channels
```
Collection<E> channels
```
    - subChannelGroups
```
Collection<E> subChannelGroups
```
    - generatedBySpec
```
ArtificialChemistrySpec generatedBySpec
```
- Class com.banda.chemistry.domain.AcCompartmentAssociation extends Object implements Serializable
  - Serialized Fields
    - id
```
Long id
```
    - version
```
Long version
```
    - order
```
Integer order
```
    - parentCompartment
```
AcCompartment parentCompartment
```
    - subCompartment
```
AcCompartment subCompartment
```
- Class com.banda.chemistry.domain.AcCompartmentChannel extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - compartment
```
AcCompartment compartment
```
    - sourceSpecies
```
AcSpecies sourceSpecies
```
    - direction
```
AcChannelDirection direction
```
    - permeability
```
Double permeability
```
    - targetSpecies
```
AcSpecies targetSpecies
```
- Class com.banda.chemistry.domain.AcCompartmentChannelGroup extends Object implements Serializable
  - Serialized Fields
    - id
```
Long id
```
    - version
```
Long version
```
    - compartment
```
AcCompartment compartment
```
    - channels
```
List<E> channels
```
- Class com.banda.chemistry.domain.AcCompositeSpecies extends AcSpecies implements Serializable
  - Serialized Fields
    - components
```
List<E> components
```
- Class com.banda.chemistry.domain.AcConcentrationLevel extends Object implements Serializable
  - Serialized Fields
    - singleValue
```
Double singleValue
```
    - lowValue
```
Double lowValue
```
    - highValue
```
Double highValue
```
- Class com.banda.chemistry.domain.AcDNAStrandSpec extends ArtificialChemistrySpec implements Serializable
  - Serialized Fields
    - singleStrandsNum
```
Integer singleStrandsNum
```
    - upperToLowerStrandRatio
```
Double upperToLowerStrandRatio
```
    - complementaryStrandsRatio
```
Double complementaryStrandsRatio
```
    - upperStrandPartialBindingDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> upperStrandPartialBindingDistribution
```
    - mirrorComplementarity
```
boolean mirrorComplementarity
```
    - useGlobalOrder
```
boolean useGlobalOrder
```
- Class com.banda.chemistry.domain.AcDNAStrandSpecBound extends ArtificialChemistrySpecBound implements Serializable
  - Serialized Fields
    - singleStrandsNum
```
ValueBound<E> singleStrandsNum
```
    - upperToLowerStrandRatio
```
ValueBound<E> upperToLowerStrandRatio
```
    - complementaryStrandsRatio
```
ValueBound<E> complementaryStrandsRatio
```
    - upperStrandPartialBindingDistributionShape
```
ValueBound<E> upperStrandPartialBindingDistributionShape
```
    - upperStrandPartialBindingDistributionLocation
```
ValueBound<E> upperStrandPartialBindingDistributionLocation
```
    - useGlobalOrder
```
boolean useGlobalOrder
```
- Class com.banda.chemistry.domain.AcDNAStrandSpeciesSet extends AcSpeciesSet implements Serializable
  - Serialized Fields
    - upperStrands
```
Collection<E> upperStrands
```
    - lowerStrands
```
Collection<E> lowerStrands
```
    - fullDoubleStrands
```
Collection<E> fullDoubleStrands
```
    - partialDoubleStrands
```
Collection<E> partialDoubleStrands
```
- Class com.banda.chemistry.domain.AcEvaluatedAction extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - applyTime
```
Integer applyTime
```
    - action
```
AcInteraction action
```
    - evaluatedActionSeries
```
AcEvaluatedActionSeries evaluatedActionSeries
```
    - evaluatedSpeciesActions
```
Set<E> evaluatedSpeciesActions
```
- Class com.banda.chemistry.domain.AcEvaluatedActionSeries extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - actionSeries
```
AcInteractionSeries actionSeries
```
    - evaluatedActions
```
Set<E> evaluatedActions
```
- Class com.banda.chemistry.domain.AcEvaluatedPerformance extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - timeCreated
```
Date timeCreated
```
    - createdBy
```
User createdBy
```
    - compartment
```
AcCompartment compartment
```
    - simulationConfig
```
AcSimulationConfig simulationConfig
```
    - actionSeries
```
AcInteractionSeries actionSeries
```
    - evaluation
```
AcEvaluation evaluation
```
    - repetitions
```
Integer repetitions
```
    - averagedCorrectRates
```
Double[] averagedCorrectRates
```
    - length
```
Integer length
```
- Class com.banda.chemistry.domain.AcEvaluatedRun extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - steps
```
Integer steps
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - evaluatedValues
```
Double[] evaluatedValues
```
    - evaluation
```
AcEvaluation evaluation
```
    - translatedRun
```
AcTranslatedRun translatedRun
```
- Class com.banda.chemistry.domain.AcEvaluatedSpeciesAction extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - speciesAction
```
AcSpeciesInteraction speciesAction
```
    - evaluatedAction
```
AcEvaluatedAction evaluatedAction
```
    - value
```
Double value
```
- Class com.banda.chemistry.domain.AcEvaluation extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - translationSeries
```
AcTranslationSeries translationSeries
```
    - periodicTranslationsNumber
```
Integer periodicTranslationsNumber
```
    - evalFunction
```
com.banda.function.domain.Function<IN,OUT> evalFunction
```
- Class com.banda.chemistry.domain.AcInteraction extends StateAction implements Serializable
  - Serialized Fields
    - speciesActions
```
Set<E> speciesActions
```
    - variableAssignments
```
Set<E> variableAssignments
```
    - actionSeries
```
AcInteractionSeries actionSeries
```
- Class com.banda.chemistry.domain.AcInteractionSeries extends BaseManipulationSeries implements Serializable
  - Serialized Fields
    - speciesSet
```
AcSpeciesSet speciesSet
```
    - variables
```
Collection<E> variables
```
    - varSequenceNum
```
Integer varSequenceNum
```
    - immutableSpecies
```
Collection<E> immutableSpecies
```
    - actions
```
Set<E> actions
```
    - parent
```
AcInteractionSeries parent
```
    - subActionSeries
```
Collection<E> subActionSeries
```
- Class com.banda.chemistry.domain.AcInteractionVariable extends AcVariable<AcInteractionSeries> implements Serializable
- Class com.banda.chemistry.domain.AcInteractionVariableAssignment extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - variable
```
AcInteractionVariable variable
```
    - action
```
AcInteraction action
```
    - settingFunction
```
com.banda.function.domain.Function<IN,OUT> settingFunction
```
- Class com.banda.chemistry.domain.AcItemHistoriesHolder extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - steps
```
Integer steps
```
      Deprecated.
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - itemHistories
```
Collection<E> itemHistories
```
    - timeSteps
```
List<E> timeSteps
```
- Class com.banda.chemistry.domain.AcItemHistory extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - sequence
```
List<E> sequence
```
    - holder
```
AcItemHistoriesHolder<I extends AcItemHistory> holder
```
- Class com.banda.chemistry.domain.AcMultiRunAnalysisResult extends com.banda.math.domain.dynamics.MultiRunAnalysisResult<Double> implements Serializable
  - Serialized Fields
    - ac
```
ArtificialChemistry ac
```
      Deprecated.
    - compartment
```
AcCompartment compartment
```
    - simulationConfig
```
AcSimulationConfig simulationConfig
```
- Class com.banda.chemistry.domain.AcParameter extends AcVariable<AcParameterSet> implements Serializable
  - Serialized Fields
    - evolFunction
```
com.banda.function.domain.Function<IN,OUT> evolFunction
```
- Class com.banda.chemistry.domain.AcParameterSet extends AcVariableSet<AcParameter> implements Serializable
  - Serialized Fields
    - speciesSet
```
AcSpeciesSet speciesSet
```
- Class com.banda.chemistry.domain.AcPerturbationPerformance extends AcEvaluatedPerformance implements Serializable
  - Serialized Fields
    - perturbationNum
```
Integer perturbationNum
```
    - perturbationStrength
```
Double perturbationStrength
```
- Class com.banda.chemistry.domain.AcRandomRatePerformance extends AcEvaluatedPerformance implements Serializable
  - Serialized Fields
    - randomRateGenerationNum
```
Integer randomRateGenerationNum
```
    - rateConstantTypeBounds
```
Collection<E> rateConstantTypeBounds
```
- Class com.banda.chemistry.domain.AcRateConstantTypeBound extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - createdBy
```
User createdBy
```
    - rateConstantType
```
AcRateConstantType rateConstantType
```
    - bound
```
ValueBound<E> bound
```
- Class com.banda.chemistry.domain.AcReaction extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - label
```
String label
```
    - priority
```
Integer priority
```
    - sortOrder
```
Integer sortOrder
```
    - speciesAssociations
```
Set<E> speciesAssociations
```
    - collectiveCatalysisType
```
AcCollectiveSpeciesReactionAssociationType collectiveCatalysisType
```
    - collectiveInhibitionType
```
AcCollectiveSpeciesReactionAssociationType collectiveInhibitionType
```
    - forwardRateFunction
```
com.banda.function.domain.Function<IN,OUT> forwardRateFunction
```
    - reverseRateFunction
```
com.banda.function.domain.Function<IN,OUT> reverseRateFunction
```
    - forwardRateConstants
```
Double[] forwardRateConstants
```
    - reverseRateConstants
```
Double[] reverseRateConstants
```
    - enabled
```
boolean enabled
```
    - reactionSet
```
AcReactionSet reactionSet
```
    - group
```
AcReactionGroup group
```
    - index
```
Integer index
```
- Class com.banda.chemistry.domain.AcReactionContainer extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - label
```
String label
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - reactions
```
List<E> reactions
```
- Class com.banda.chemistry.domain.AcReactionGroup extends AcReactionContainer implements Serializable
  - Serialized Fields
    - reactionSet
```
AcReactionSet reactionSet
```
- Class com.banda.chemistry.domain.AcReactionSet extends AcReactionContainer implements Serializable
  - Serialized Fields
    - speciesSet
```
AcSpeciesSet speciesSet
```
    - groups
```
List<E> groups
```
- Class com.banda.chemistry.domain.AcReactionSetConstraints extends Object implements Serializable
  - Serialized Fields
    - reactionToSpeciesConstraints
```
AcReactionToSpeciesConstraints reactionToSpeciesConstraints
```
    - speciesToReactionConstraints
```
AcSpeciesToReactionConstraints speciesToReactionConstraints
```
    - reactionsPerSpeciesRatio
```
Double reactionsPerSpeciesRatio
```
    - reactionsPerSpeciesRatioAssocType
```
AcSpeciesAssociationType reactionsPerSpeciesRatioAssocType
```
- Class com.banda.chemistry.domain.AcReactionToSpeciesConstraints extends Object implements Serializable
  - Serialized Fields
    - maxReactantsNum
```
Integer maxReactantsNum
```
    - maxProductsNum
```
Integer maxProductsNum
```
    - maxCatalystsNum
```
Integer maxCatalystsNum
```
    - maxInhibitorsNum
```
Integer maxInhibitorsNum
```
    - minReactantsNum
```
Integer minReactantsNum
```
    - minProductsNum
```
Integer minProductsNum
```
    - minCatalystsNum
```
Integer minCatalystsNum
```
    - minInhibitorsNum
```
Integer minInhibitorsNum
```
- Class com.banda.chemistry.domain.AcSimulationConfig extends Object implements Serializable
  - Serialized Fields
    - id
```
Long id
```
    - version
```
Long version
```
    - timeCreated
```
Date timeCreated
```
    - createdBy
```
User createdBy
```
    - name
```
String name
```
    - odeSolverType
```
com.banda.function.domain.ODESolverType odeSolverType
```
    - upperThreshold
```
Double upperThreshold
```
    - lowerThreshold
```
Double lowerThreshold
```
    - timeStep
```
Double timeStep
```
    - tolerance
```
Double tolerance
```
    - fixedPointDetectionPrecision
```
Double fixedPointDetectionPrecision
```
    - fixedPointDetectionPeriodicity
```
Double fixedPointDetectionPeriodicity
```
    - influxScale
```
Double influxScale
```
      Deprecated.
- Class com.banda.chemistry.domain.AcSpecies extends AcVariable<AcSpeciesSet> implements Serializable
  - Serialized Fields
    - structure
```
String structure
```
    - group
```
AcSpeciesGroup group
```
- Class com.banda.chemistry.domain.AcSpeciesAssociation extends Object implements Serializable
  - Serialized Fields
    - species
```
AcSpecies species
```
    - type
```
AcSpeciesAssociationType type
```
- Class com.banda.chemistry.domain.AcSpeciesGroup extends AcVariableGroup<AcSpecies> implements Serializable
- Class com.banda.chemistry.domain.AcSpeciesInteraction extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - species
```
AcSpecies species
```
    - action
```
AcInteraction action
```
    - settingFunction
```
com.banda.function.domain.Function<IN,OUT> settingFunction
```
- Class com.banda.chemistry.domain.AcSpeciesReactionAssociation extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - species
```
AcSpecies species
```
    - reaction
```
AcReaction reaction
```
    - stoichiometricFactor
```
Double stoichiometricFactor
```
    - type
```
AcSpeciesAssociationType type
```
    - order
```
Integer order
```
- Class com.banda.chemistry.domain.AcSpeciesSet extends AcVariableSet<AcSpecies> implements Serializable
  - Serialized Fields
    - varSequenceNum
```
Integer varSequenceNum
```
    - parentSpeciesSet
```
AcSpeciesSet parentSpeciesSet
```
    - parameterSet
```
AcParameterSet parameterSet
```
    - speciesGroupMap
```
Map<K,V> speciesGroupMap
```
- Class com.banda.chemistry.domain.AcSpeciesToReactionConstraints extends Object implements Serializable
  - Serialized Fields
    - fixedReactantAssocsNum
```
Integer fixedReactantAssocsNum
```
    - fixedProductAssocsNum
```
Integer fixedProductAssocsNum
```
    - fixedCatalystAssocsNum
```
Integer fixedCatalystAssocsNum
```
    - fixedInhibitorAssocsNum
```
Integer fixedInhibitorAssocsNum
```
    - randomReactantAssocsNumDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> randomReactantAssocsNumDistribution
```
    - randomProductAssocsNumDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> randomProductAssocsNumDistribution
```
    - randomCatalystAssocsNumDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> randomCatalystAssocsNumDistribution
```
    - randomInhibitorAssocsNumDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> randomInhibitorAssocsNumDistribution
```
    - reactantMultiplicity
```
Integer reactantMultiplicity
```
- Class com.banda.chemistry.domain.AcSymmetricSpec extends ArtificialChemistrySpec implements Serializable
  - Serialized Fields
    - speciesNum
```
Integer speciesNum
```
    - reactionNum
```
Integer reactionNum
```
    - reactantsPerReactionNumber
```
Integer reactantsPerReactionNumber
```
    - productsPerReactionNumber
```
Integer productsPerReactionNumber
```
    - catalystsPerReactionNumber
```
Integer catalystsPerReactionNumber
```
    - inhibitorsPerReactionNumber
```
Integer inhibitorsPerReactionNumber
```
- Class com.banda.chemistry.domain.AcSymmetricSpecBound extends ArtificialChemistrySpecBound implements Serializable
  - Serialized Fields
    - speciesNum
```
ValueBound<E> speciesNum
```
    - reactionNum
```
ValueBound<E> reactionNum
```
    - reactantsPerReactionNumber
```
ValueBound<E> reactantsPerReactionNumber
```
    - productsPerReactionNumber
```
ValueBound<E> productsPerReactionNumber
```
    - catalystsPerReactionNumber
```
ValueBound<E> catalystsPerReactionNumber
```
    - inhibitorsPerReactionNumber
```
ValueBound<E> inhibitorsPerReactionNumber
```
- Class com.banda.chemistry.domain.AcTranslatedRun extends AcItemHistoriesHolder<AcTranslationItemHistory> implements Serializable
  - Serialized Fields
    - acRunTrace
```
ComponentRunTrace<T,C> acRunTrace
```
    - translationSeries
```
AcTranslationSeries translationSeries
```
- Class com.banda.chemistry.domain.AcTranslation extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - fromTime
```
Integer fromTime
```
    - toTime
```
Integer toTime
```
    - translationSeries
```
AcTranslationSeries translationSeries
```
    - translationItems
```
Set<E> translationItems
```
- Class com.banda.chemistry.domain.AcTranslationItem extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - variable
```
AcTranslationVariable variable
```
    - translation
```
AcTranslation translation
```
    - translationFunction
```
com.banda.function.domain.Function<IN,OUT> translationFunction
```
- Class com.banda.chemistry.domain.AcTranslationItemHistory extends AcItemHistory<AcTranslatedRun> implements Serializable
  - Serialized Fields
    - variable
```
AcTranslationVariable variable
```
- Class com.banda.chemistry.domain.AcTranslationSeries extends BaseManipulationSeries implements Serializable
  - Serialized Fields
    - speciesSet
```
AcSpeciesSet speciesSet
```
    - variables
```
Collection<E> variables
```
    - varSequenceNum
```
Integer varSequenceNum
```
    - variablesReferenced
```
boolean variablesReferenced
```
    - defaultVariableValue
```
Double defaultVariableValue
```
    - translations
```
Set<E> translations
```
    - translatedRuns
```
List<E> translatedRuns
```
- Class com.banda.chemistry.domain.AcTranslationVariable extends AcVariable<AcTranslationSeries> implements Serializable
- Class com.banda.chemistry.domain.AcVariable extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - label
```
String label
```
    - sortOrder
```
Integer sortOrder
```
    - variableIndex
```
Integer variableIndex
```
    - parentSet
```
AcVariableSetIF<M extends AcVariable<? extends AcVariableSetIF>> parentSet
```
- Class com.banda.chemistry.domain.AcVariableGroup extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - label
```
String label
```
    - variables
```
Collection<E> variables
```
- Class com.banda.chemistry.domain.AcVariableSet extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - variables
```
Collection<E> variables
```
- Class com.banda.chemistry.domain.ArtificialChemistry extends TechnicalDomainObject implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - createTime
```
Date createTime
```
    - createdBy
```
User createdBy
```
    - skinCompartment
```
AcCompartment skinCompartment
```
    - generatedBySpec
```
ArtificialChemistrySpec generatedBySpec
```
    - simulationConfig
```
AcSimulationConfig simulationConfig
```
    - multiRunAnalysisResults
```
Collection<E> multiRunAnalysisResults
```
- Class com.banda.chemistry.domain.ArtificialChemistrySpec extends Object implements Serializable
  - Serialized Fields
    - id
```
Long id
```
    - version
```
Long version
```
    - timeCreated
```
Date timeCreated
```
    - createdBy
```
User createdBy
```
    - name
```
String name
```
    - rateConstantDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> rateConstantDistribution
```
    - includeReverseReactions
```
boolean includeReverseReactions
```
    - speciesForbiddenRedundancy
```
AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy
```
    - influxRatio
```
Double influxRatio
```
    - influxRateConstantDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> influxRateConstantDistribution
```
    - outfluxRatio
```
Double outfluxRatio
```
    - outfluxAll
```
boolean outfluxAll
```
    - outfluxRateConstantDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> outfluxRateConstantDistribution
```
    - outfluxNonReactiveRateConstantDistribution
```
com.banda.math.domain.rand.RandomDistribution<T> outfluxNonReactiveRateConstantDistribution
```
    - constantSpeciesRatio
```
Double constantSpeciesRatio
```
    - acs
```
Collection<E> acs
```
- Class com.banda.chemistry.domain.ArtificialChemistrySpecBound extends Object implements Serializable
  - Serialized Fields
    - id
```
Long id
```
    - version
```
Long version
```
    - timeCreated
```
Date timeCreated
```
    - createdBy
```
User createdBy
```
    - name
```
String name
```
    - influxRatio
```
ValueBound<E> influxRatio
```
    - outfluxRatio
```
ValueBound<E> outfluxRatio
```
    - constantSpeciesRatio
```
ValueBound<E> constantSpeciesRatio
```
    - rateConstantDistributionShape
```
ValueBound<E> rateConstantDistributionShape
```
    - rateConstantDistributionLocation
```
ValueBound<E> rateConstantDistributionLocation
```
    - influxRateConstantDistributionShape
```
ValueBound<E> influxRateConstantDistributionShape
```
    - influxRateConstantDistributionLocation
```
ValueBound<E> influxRateConstantDistributionLocation
```
    - outfluxRateConstantDistributionShape
```
ValueBound<E> outfluxRateConstantDistributionShape
```
    - outfluxRateConstantDistributionLocation
```
ValueBound<E> outfluxRateConstantDistributionLocation
```
    - outfluxNonReactiveRateConstantDistributionShape
```
ValueBound<E> outfluxNonReactiveRateConstantDistributionShape
```
    - outfluxNonReactiveRateConstantDistributionLocation
```
ValueBound<E> outfluxNonReactiveRateConstantDistributionLocation
```

Serialized Form

Package com.banda.chemistry

Class com.banda.chemistry.BndChemistryException extends RuntimeException implements Serializable

Package com.banda.chemistry.business

Class com.banda.chemistry.business.AcEvaluationBOFactory extends Object implements Serializable

Serialized Fields

functionEvaluatorFactory

Class com.banda.chemistry.business.AcInterpretationFactory extends Object implements Serializable

Serialized Fields

com$banda$chemistry$business$AcInterpretationFactory$$funEvaluatorFactory

Class com.banda.chemistry.business.AcScriptFactory extends Object implements Serializable

Serialized Fields

com$banda$chemistry$business$AcScriptFactory$$funEvaluatorFactory

Class com.banda.chemistry.business.BndChemistryValidationException extends BndChemistryException implements Serializable

Class com.banda.chemistry.business.ChemistryInterpretationFactory extends Object implements Serializable

Serialized Fields

functionEvaluatorFactory

acInterpretationFactory

Class com.banda.chemistry.business.ChemistryRunnableFactory extends Object implements Serializable

Serialized Fields

functionEvaluatorFactory

acScriptFactory

beforeAlternationTimeDiff

Class com.banda.chemistry.business.ChemistryRunSetting extends Object implements Serializable

Serialized Fields

upperThresholdViolationHandling

zeroThresholdViolationHandling

notANumberConcentrationHandling

storeSpeciesHistorySelectionGroup

Package com.banda.chemistry.domain

Class com.banda.chemistry.domain.AcCompartment extends TechnicalDomainObject implements Serializable

Serialized Fields

label

createTime

createdBy

reactionSet

parentCompartmentAssociations

subCompartmentAssociations

channels

subChannelGroups

generatedBySpec

Class com.banda.chemistry.domain.AcCompartmentAssociation extends Object implements Serializable

Serialized Fields

id

version

order

parentCompartment

subCompartment

Class com.banda.chemistry.domain.AcCompartmentChannel extends TechnicalDomainObject implements Serializable

Serialized Fields

compartment

sourceSpecies

direction

permeability

targetSpecies

Class com.banda.chemistry.domain.AcCompartmentChannelGroup extends Object implements Serializable

Serialized Fields

id

version

compartment

channels

Class com.banda.chemistry.domain.AcCompositeSpecies extends AcSpecies implements Serializable

Serialized Fields

components

Class com.banda.chemistry.domain.AcConcentrationLevel extends Object implements Serializable

Serialized Fields

singleValue

lowValue

highValue

Class com.banda.chemistry.domain.AcDNAStrandSpec extends ArtificialChemistrySpec implements Serializable

Serialized Fields

singleStrandsNum

upperToLowerStrandRatio

complementaryStrandsRatio

upperStrandPartialBindingDistribution

mirrorComplementarity

useGlobalOrder

Class com.banda.chemistry.domain.AcDNAStrandSpecBound extends ArtificialChemistrySpecBound implements Serializable

Serialized Fields

singleStrandsNum