com.banda.chemistry.business

Class AcKineticsBO

java.lang.Object

com.banda.chemistry.business.AcKineticsBO

public abstract class AcKineticsBO
extends Object

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	AcKineticsBO(AcReaction reaction, boolean forwardReactionFlag, Collection<AcParameter> substitutionParameters)

Method Summary

Methods

Modifier and Type	Method and Description
static Map<String,Integer>	createExpressionParameterIndexMap(Collection<AcParameter> substitutionParameters)
static AcKineticsBO	createInstance(AcReaction reaction, boolean forwardReactionFlag)
static AcKineticsBO	createInstance(AcReaction reaction, boolean forwardReactionFlag, Collection<AcParameter> substitutionParameters)
com.banda.function.domain.Function<Double,Double>	createRateFunction()
String	createRateFunctionExpression()
abstract String	createRateFunctionExpressionWithoutConstants()
com.banda.function.domain.Function<Double,Double>	createRateFunctionWithoutConstants()
protected ArtificialChemistryUtil	getAcUtil()
protected Collection<AcSpeciesReactionAssociation>	getCatalystAssocs()
abstract Collection<Integer>	getGuardVariableIndeces()
protected Collection<AcSpeciesReactionAssociation>	getInhibitorAssocs()
abstract String	getKineticsName()
protected Integer	getParameterIndex(String expression)
protected Collection<AcSpeciesReactionAssociation>	getProductAssocs()
protected int	getProductsNum()
protected Double	getRateConstant(int index)
protected Double[]	getRateConstants()
protected int	getRateConstantsNum()
abstract Collection<AcRateConstantType>	getRateConstantTypes()
protected Collection<AcSpeciesReactionAssociation>	getReactantAssocs()
protected int	getReactantsNum()
protected AcReaction	getReaction()
protected Long	getReactionId()
abstract int	getRequiredRateConstantsNum()
protected boolean	hasRateConstantsNum()
protected void	throwMissingAttributeException(String missingAttribute)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AcKineticsBO

protected AcKineticsBO(AcReaction reaction,
            boolean forwardReactionFlag,
            Collection<AcParameter> substitutionParameters)

Method Detail

createExpressionParameterIndexMap

public static Map<String,Integer> createExpressionParameterIndexMap(Collection<AcParameter> substitutionParameters)

validate

public void validate()

createInstance

public static AcKineticsBO createInstance(AcReaction reaction,
                          boolean forwardReactionFlag)

createInstance

public static AcKineticsBO createInstance(AcReaction reaction,
                          boolean forwardReactionFlag,
                          Collection<AcParameter> substitutionParameters)

createRateFunction

public com.banda.function.domain.Function<Double,Double> createRateFunction()

createRateFunctionWithoutConstants

public com.banda.function.domain.Function<Double,Double> createRateFunctionWithoutConstants()

createRateFunctionExpression

public String createRateFunctionExpression()

getRequiredRateConstantsNum

public abstract int getRequiredRateConstantsNum()

createRateFunctionExpressionWithoutConstants

public abstract String createRateFunctionExpressionWithoutConstants()

getRateConstantTypes

public abstract Collection<AcRateConstantType> getRateConstantTypes()

getKineticsName

public abstract String getKineticsName()

getGuardVariableIndeces

public abstract Collection<Integer> getGuardVariableIndeces()

getRateConstant

protected Double getRateConstant(int index)

getRateConstants

protected Double[] getRateConstants()

getRateConstantsNum

protected int getRateConstantsNum()

hasRateConstantsNum

protected boolean hasRateConstantsNum()

getReactionId

protected Long getReactionId()

getReaction

protected AcReaction getReaction()

getReactantAssocs

protected Collection<AcSpeciesReactionAssociation> getReactantAssocs()

getProductAssocs

protected Collection<AcSpeciesReactionAssociation> getProductAssocs()

getCatalystAssocs

protected Collection<AcSpeciesReactionAssociation> getCatalystAssocs()

getInhibitorAssocs

protected Collection<AcSpeciesReactionAssociation> getInhibitorAssocs()

getReactantsNum

protected int getReactantsNum()

getProductsNum

protected int getProductsNum()

getParameterIndex

protected Integer getParameterIndex(String expression)

getAcUtil

protected ArtificialChemistryUtil getAcUtil()

throwMissingAttributeException

protected void throwMissingAttributeException(String missingAttribute)