com.banda.chemistry.domain
Class AcDNAStrandSpec

java.lang.Object
  com.banda.chemistry.domain.ArtificialChemistrySpec
      com.banda.chemistry.domain.AcDNAStrandSpec

public class AcDNAStrandSpec
extends ArtificialChemistrySpec

Constructor Summary

AcDNAStrandSpec()

Method Summary

Double	getComplementaryStrandsRatio()
Integer	getSingleStrandsNum()
com.banda.core.domain.rand.RandomDistribution<Integer>	getUpperStrandPartialBindingDistribution()
Double	getUpperToLowerStrandRatio()
boolean	isMirrorComplementarity()
boolean	isUseGlobalOrder()
void	setComplementaryStrandsRatio(Double complementaryStrandsRatio)
void	setMirrorComplementarity(boolean mirrorComplementarity)
void	setSingleStrandsNum(Integer singleStrandsNum)
void	setUpperStrandPartialBindingDistribution(com.banda.core.domain.rand.RandomDistribution<Integer> upperStrandPartialBindingDistribution)
void	setUpperToLowerStrandRatio(Double upperToLowerStrandRatio)
void	setUseGlobalOrder(boolean useGlobalOrder)

Methods inherited from class com.banda.chemistry.domain.ArtificialChemistrySpec

addAc, getAcs, getConstantSpeciesRatio, getId, getInfluxRateConstantDistribution, getInfluxRatio, getName, getOutfluxNonReactiveRateConstantDistribution, getOutfluxRateConstantDistribution, getOutfluxRatio, getRateConstantDistribution, getSpeciesForbiddenRedundancy, getTimeCreated, getVersion, hasOutfluxNonReactiveRateConstantDistribution, isIncludeReverseReactions, isOutfluxAll, removeAc, setAcs, setConstantSpeciesRatio, setId, setIncludeReverseReactions, setInfluxRateConstantDistribution, setInfluxRatio, setName, setOutfluxAll, setOutfluxNonReactiveRateConstantDistribution, setOutfluxRateConstantDistribution, setOutfluxRatio, setRateConstantDistribution, setSpeciesForbiddenRedundancy, setTimeCreated, setVersion

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AcDNAStrandSpec

public AcDNAStrandSpec()

Method Detail

getUpperToLowerStrandRatio

public Double getUpperToLowerStrandRatio()

setUpperToLowerStrandRatio

public void setUpperToLowerStrandRatio(Double upperToLowerStrandRatio)

getComplementaryStrandsRatio

public Double getComplementaryStrandsRatio()

setComplementaryStrandsRatio

public void setComplementaryStrandsRatio(Double complementaryStrandsRatio)

getUpperStrandPartialBindingDistribution

public com.banda.core.domain.rand.RandomDistribution<Integer> getUpperStrandPartialBindingDistribution()

setUpperStrandPartialBindingDistribution

public void setUpperStrandPartialBindingDistribution(com.banda.core.domain.rand.RandomDistribution<Integer> upperStrandPartialBindingDistribution)

isMirrorComplementarity

public boolean isMirrorComplementarity()

setMirrorComplementarity

public void setMirrorComplementarity(boolean mirrorComplementarity)

getSingleStrandsNum

public Integer getSingleStrandsNum()

setSingleStrandsNum

public void setSingleStrandsNum(Integer singleStrandsNum)

isUseGlobalOrder

public boolean isUseGlobalOrder()

setUseGlobalOrder

public void setUseGlobalOrder(boolean useGlobalOrder)