com.banda.chemistry.domain
Class ArtificialChemistrySpec

java.lang.Object
  com.banda.chemistry.domain.ArtificialChemistrySpec

Direct Known Subclasses:

AcDNAStrandSpec, AcSymmetricSpec

public class ArtificialChemistrySpec
extends Object

Constructor Summary

ArtificialChemistrySpec()

Method Summary

void	addAc(ArtificialChemistry ac)
Collection<ArtificialChemistry>	getAcs()
Double	getConstantSpeciesRatio()
Long	getId()
com.banda.core.domain.rand.RandomDistribution<Double>	getInfluxRateConstantDistribution()
Double	getInfluxRatio()
String	getName()
com.banda.core.domain.rand.RandomDistribution<Double>	getOutfluxNonReactiveRateConstantDistribution()
com.banda.core.domain.rand.RandomDistribution<Double>	getOutfluxRateConstantDistribution()
Double	getOutfluxRatio()
com.banda.core.domain.rand.RandomDistribution<Double>	getRateConstantDistribution()
AcReactionSpeciesForbiddenRedundancy	getSpeciesForbiddenRedundancy()
Date	getTimeCreated()
Long	getVersion()
boolean	hasOutfluxNonReactiveRateConstantDistribution()
boolean	isIncludeReverseReactions()
boolean	isOutfluxAll()
void	removeAc(ArtificialChemistry ac)
void	setAcs(Collection<ArtificialChemistry> acs)
void	setConstantSpeciesRatio(Double constantSpeciesRatio)
void	setId(Long id)
void	setIncludeReverseReactions(boolean includeReverseReactions)
void	setInfluxRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> influxRateConstantDistribution)
void	setInfluxRatio(Double influxRatio)
void	setName(String name)
void	setOutfluxAll(boolean outfluxAll)
void	setOutfluxNonReactiveRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> outfluxNonReactiveRateConstantDistribution)
void	setOutfluxRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> outfluxRateConstantDistribution)
void	setOutfluxRatio(Double outfluxRatio)
void	setRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> rateConstantDistribution)
void	setSpeciesForbiddenRedundancy(AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)
void	setTimeCreated(Date timeCreated)
void	setVersion(Long version)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArtificialChemistrySpec

public ArtificialChemistrySpec()

Method Detail

getId

public Long getId()

setId

public void setId(Long id)

getVersion

public Long getVersion()

setVersion

public void setVersion(Long version)

getTimeCreated

public Date getTimeCreated()

setTimeCreated

public void setTimeCreated(Date timeCreated)

getName

public String getName()

setName

public void setName(String name)

getRateConstantDistribution

public com.banda.core.domain.rand.RandomDistribution<Double> getRateConstantDistribution()

setRateConstantDistribution

public void setRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> rateConstantDistribution)

isIncludeReverseReactions

public boolean isIncludeReverseReactions()

setIncludeReverseReactions

public void setIncludeReverseReactions(boolean includeReverseReactions)

getSpeciesForbiddenRedundancy

public AcReactionSpeciesForbiddenRedundancy getSpeciesForbiddenRedundancy()

setSpeciesForbiddenRedundancy

public void setSpeciesForbiddenRedundancy(AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy)

getInfluxRateConstantDistribution

public com.banda.core.domain.rand.RandomDistribution<Double> getInfluxRateConstantDistribution()

setInfluxRateConstantDistribution

public void setInfluxRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> influxRateConstantDistribution)

getOutfluxRateConstantDistribution

public com.banda.core.domain.rand.RandomDistribution<Double> getOutfluxRateConstantDistribution()

setOutfluxRateConstantDistribution

public void setOutfluxRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> outfluxRateConstantDistribution)

isOutfluxAll

public boolean isOutfluxAll()

setOutfluxAll

public void setOutfluxAll(boolean outfluxAll)

getInfluxRatio

public Double getInfluxRatio()

setInfluxRatio

public void setInfluxRatio(Double influxRatio)

getOutfluxRatio

public Double getOutfluxRatio()

setOutfluxRatio

public void setOutfluxRatio(Double outfluxRatio)

getConstantSpeciesRatio

public Double getConstantSpeciesRatio()

setConstantSpeciesRatio

public void setConstantSpeciesRatio(Double constantSpeciesRatio)

getAcs

public Collection<ArtificialChemistry> getAcs()

setAcs

public void setAcs(Collection<ArtificialChemistry> acs)

addAc

public void addAc(ArtificialChemistry ac)

removeAc

public void removeAc(ArtificialChemistry ac)

hasOutfluxNonReactiveRateConstantDistribution

public boolean hasOutfluxNonReactiveRateConstantDistribution()

getOutfluxNonReactiveRateConstantDistribution

public com.banda.core.domain.rand.RandomDistribution<Double> getOutfluxNonReactiveRateConstantDistribution()

setOutfluxNonReactiveRateConstantDistribution

public void setOutfluxNonReactiveRateConstantDistribution(com.banda.core.domain.rand.RandomDistribution<Double> outfluxNonReactiveRateConstantDistribution)