com.banda.chemistry.domain
Class Membrane<OBJECT_TYPE>

java.lang.Object
  com.banda.core.domain.DomainObject<Long>
      com.banda.core.domain.TechnicalDomainObject
          com.banda.chemistry.domain.Membrane<OBJECT_TYPE>

All Implemented Interfaces:

com.banda.core.domain.KeyHolder<Long>, Serializable

Direct Known Subclasses:

MembraneWithAtoms, RewritingMembrane

public class Membrane<OBJECT_TYPE>
extends com.banda.core.domain.TechnicalDomainObject

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class com.banda.core.domain.DomainObject

com.banda.core.domain.DomainObject.DomainObjectKeyComparator<K extends Serializable & Comparable<K>>

Constructor Summary

Membrane()

Method Summary

void	addObject(OBJECT_TYPE object)
void	addRule(EvolutionRule<OBJECT_TYPE> rule)
void	addSubMembrane(Membrane<OBJECT_TYPE> subMembrane)
String[]	getAlphabet()
Set<OBJECT_TYPE>	getConfiguration()
String	getName()
Membrane<OBJECT_TYPE>	getOutputMembrane()
Membrane<OBJECT_TYPE>	getParent()
Set<EvolutionRule<OBJECT_TYPE>>	getRules()
List<Membrane<OBJECT_TYPE>>	getSubMembranes()
void	removeObject(OBJECT_TYPE object)
void	removeRule(EvolutionRule<OBJECT_TYPE> rule)
void	removeRule(Membrane<OBJECT_TYPE> subMembrane)
void	setAlphabet(String[] alphabet)
protected void	setConfiguration(com.banda.core.MultiSet<OBJECT_TYPE> configuration)
void	setName(String name)
void	setOutputMembrane(Membrane<OBJECT_TYPE> outputMembrane)
protected void	setParent(Membrane<OBJECT_TYPE> parent)
protected void	setRules(Set<EvolutionRule<OBJECT_TYPE>> rules)
protected void	setSubMembranes(List<Membrane<OBJECT_TYPE>> subMembranes)

Methods inherited from class com.banda.core.domain.TechnicalDomainObject

getId, getKey, getVersion, setId, setKey, setVersion

Methods inherited from class com.banda.core.domain.DomainObject

copyFrom, equals, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Membrane

public Membrane()

Method Detail

getName

public String getName()

setName

public void setName(String name)

getParent

public Membrane<OBJECT_TYPE> getParent()

setParent

protected void setParent(Membrane<OBJECT_TYPE> parent)

getSubMembranes

public List<Membrane<OBJECT_TYPE>> getSubMembranes()

setSubMembranes

protected void setSubMembranes(List<Membrane<OBJECT_TYPE>> subMembranes)

addSubMembrane

public void addSubMembrane(Membrane<OBJECT_TYPE> subMembrane)

removeRule

public void removeRule(Membrane<OBJECT_TYPE> subMembrane)

getAlphabet

public String[] getAlphabet()

setAlphabet

public void setAlphabet(String[] alphabet)

getConfiguration

public Set<OBJECT_TYPE> getConfiguration()

setConfiguration

protected void setConfiguration(com.banda.core.MultiSet<OBJECT_TYPE> configuration)

addObject

public void addObject(OBJECT_TYPE object)

removeObject

public void removeObject(OBJECT_TYPE object)

getRules

public Set<EvolutionRule<OBJECT_TYPE>> getRules()

setRules

protected void setRules(Set<EvolutionRule<OBJECT_TYPE>> rules)

addRule

public void addRule(EvolutionRule<OBJECT_TYPE> rule)

removeRule

public void removeRule(EvolutionRule<OBJECT_TYPE> rule)

getOutputMembrane

public Membrane<OBJECT_TYPE> getOutputMembrane()

setOutputMembrane

public void setOutputMembrane(Membrane<OBJECT_TYPE> outputMembrane)