Uses of Class
com.banda.chemistry.domain.AcSpecies

Packages that use AcSpecies

com.banda.chemistry.domain
com.banda.chemistry.task

Uses of AcSpecies in com.banda.chemistry.domain

Subclasses of AcSpecies in com.banda.chemistry.domain

class

AcCompositeSpecies

Methods in com.banda.chemistry.domain that return AcSpecies

AcSpecies	AcCompartmentChannel.getPermeability()
AcSpecies	AcEvaluatedSpeciesAction.getSpecies()
AcSpecies	AcSpeciesRunHistory.getSpecies()
AcSpecies	AcSpeciesAction.getSpecies()
AcSpecies	AcSpeciesReactionAssociation.getSpecies()
AcSpecies	AcSpeciesAssociation.getSpecies()
AcSpecies	AcCompartmentChannel.getSpecies()

Methods in com.banda.chemistry.domain that return types with arguments of type AcSpecies

List<AcSpecies>	AcCompositeSpecies.getComponents()
Collection<AcSpecies>	AcSpeciesSet.getInternalSpecies()
Collection<AcSpecies>	AcDNAStrandSpeciesSet.getLowerStrands()
Collection<AcSpecies>	AcSpeciesSet.getNonInputFeedbackSpecies()
Collection<AcSpecies>	AcSpeciesSet.getNonInternalSpecies()
Collection<AcSpecies>	AcSpeciesSet.getOwnAndInheritedSpecies(AcSpeciesType type)
Collection<AcSpecies>	AcSpeciesSet.getOwnAndInheritedVariables()
Collection<AcSpecies>	AcAction.getPreviousActionSpecies()
Collection<AcSpecies>	AcRun.getSpecies()
Collection<AcSpecies>	AcSpeciesSetManipulationSeries.getSpecies()
Collection<AcSpecies>	AcRangeTranslation.getSpecies()
Collection<AcSpecies>	AcAction.getSpecies()
Collection<AcSpecies>	ArtificialChemistry.getSpecies()
Collection<AcSpecies>	AcCompartment.getSpecies()
Collection<AcSpecies>	AcReactionSet.getSpecies()
Collection<AcSpecies>	AcTranslatedRun.getSpecies()
Collection<AcSpecies>	AcSpeciesSet.getSpecies(AcSpeciesType type)
Collection<AcSpecies>	AcDNAStrandSpeciesSet.getUpperStrands()

Methods in com.banda.chemistry.domain with parameters of type AcSpecies

void	AcReaction.addAssociationForSpecies(AcSpecies species, AcSpeciesAssociationType type)
void	AcCompositeSpecies.addComponent(AcSpecies component)
void	AcDNAStrandSpeciesSet.addLowerStrand(AcSpecies lowerStrand)
void	AcSpeciesSet.addSpeciesToGroup(AcSpeciesType type, AcSpecies species)
void	AcDNAStrandSpeciesSet.addUpperStrand(AcSpecies upperStrand)
void	AcSpeciesGroup.addVariable(AcSpecies variable)
void	AcCompartmentChannel.setPermeability(AcSpecies permeability)
void	AcSpeciesRunHistory.setSpecies(AcSpecies species)
void	AcSpeciesAction.setSpecies(AcSpecies species)
void	AcSpeciesReactionAssociation.setSpecies(AcSpecies species)
void	AcCompartmentChannel.setSpecies(AcSpecies species)

Method parameters in com.banda.chemistry.domain with type arguments of type AcSpecies

void	AcReaction.addAssociationsForSpecies(Collection<AcSpecies> species, AcSpeciesAssociationType type)
static Collection<AcSpeciesReactionAssociation>	AcSpeciesReactionAssociation.createCollection(Collection<AcSpecies> species, AcSpeciesAssociationType assocType)
void	AcRun.initItemHistories(Collection<AcSpecies> species)
void	AcCompositeSpecies.setComponents(List<AcSpecies> components)
void	AcDNAStrandSpeciesSet.setLowerStrands(Collection<AcSpecies> lowerStrands)
void	AcAction.setPreviousActionSpecies(Collection<AcSpecies> previousActionSpecies)
void	AcDNAStrandSpeciesSet.setUpperStrands(Collection<AcSpecies> upperStrands)

Constructors in com.banda.chemistry.domain with parameters of type AcSpecies

AcSpeciesAssociation(AcSpecies species, AcSpeciesAssociationType type)

AcSpeciesReactionAssociation(AcSpecies species, AcSpeciesAssociationType type)

AcSpeciesReactionAssociation(AcSpecies species, AcSpeciesAssociationType type, Double stoichiometricFactor)

AcSpeciesReactionAssociation(AcSpecies species, Double stoichiometricFactor)

AcSpeciesRunHistory(AcSpecies species)

Constructor parameters in com.banda.chemistry.domain with type arguments of type AcSpecies

AcSpeciesGroup(Collection<AcSpecies> species)

Uses of AcSpecies in com.banda.chemistry.task

Methods in com.banda.chemistry.task that return types with arguments of type AcSpecies

Collection<AcSpecies>

AcCoreRunTask.getStoreSpeciesHistorySelectionGroup()

Method parameters in com.banda.chemistry.task with type arguments of type AcSpecies

void	AcCoreRunTask.setStoreSpeciesHistorySelectionGroup(Collection<AcSpecies> storeSpeciesHistorySelectionGroup)