Hierarchy For All Packages

Package Hierarchies:

com.banda.chemistry, com.banda.chemistry.domain, com.banda.chemistry.task

Class Hierarchy

• java.lang.Object
  • com.banda.chemistry.domain.AcConcentrationLevel
  • com.banda.chemistry.domain.AcEvaluationItem.AcEvaluationItemOrderComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcItemHistory.AcItemHistoryLabelComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcRangeTranslation.AcTranslationFromTimeComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcReactionSetConstraints
  • com.banda.chemistry.domain.AcReactionSetSpec
  • com.banda.chemistry.domain.AcReactionToSpeciesConstraints
  • com.banda.chemistry.task.AcRunEventData
  • com.banda.chemistry.domain.AcSimulationConfig
  • com.banda.chemistry.domain.AcSpeciesAssociation
  • com.banda.chemistry.domain.AcSpeciesReactionAssociation.AcSpeciesReactionAssociationIndexComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcSpeciesRunHistory.AcSpeciesHistoryVarIndexComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcSpeciesToReactionConstraints
  • com.banda.chemistry.domain.AcVariable.AcVariableIndexComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.AcVariable.AcVariableLabelComparator (implements java.util.Comparator<T>)
  • com.banda.chemistry.domain.ArtificialChemistrySpec
    • com.banda.chemistry.domain.AcDNAStrandSpec
    • com.banda.chemistry.domain.AcSymmetricSpec
  • com.banda.chemistry.domain.ArtificialChemistrySpecBound
    • com.banda.chemistry.domain.AcDNAStrandSpecBound
    • com.banda.chemistry.domain.AcSymmetricSpecBound
  • com.banda.core.domain.DomainObject<KEY> (implements com.banda.core.domain.KeyHolder<KEY>, java.io.Serializable)
    • com.banda.core.domain.TechnicalDomainObject
      • com.banda.chemistry.domain.AcAction (implements java.lang.Comparable<T>)
      • com.banda.chemistry.domain.AcCompartment
      • com.banda.chemistry.domain.AcCompartmentChannel
      • com.banda.chemistry.domain.AcEvaluatedAction (implements java.lang.Comparable<T>)
      • com.banda.chemistry.domain.AcEvaluatedActionSeries
      • com.banda.chemistry.domain.AcEvaluatedPerformance
        • com.banda.chemistry.domain.AcPerturbationPerformance
        • com.banda.chemistry.domain.AcRandomRatePerformance
      • com.banda.chemistry.domain.AcEvaluatedRun
      • com.banda.chemistry.domain.AcEvaluatedSpeciesAction
      • com.banda.chemistry.domain.AcEvaluation
      • com.banda.chemistry.domain.AcEvaluationItem (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcItemHistoriesHolder<I>
        • com.banda.chemistry.domain.AcRun
        • com.banda.chemistry.domain.AcTranslatedRun
      • com.banda.chemistry.domain.AcItemHistory<H>
        • com.banda.chemistry.domain.AcSpeciesRunHistory
        • com.banda.chemistry.domain.AcTranslationItemHistory
      • com.banda.chemistry.domain.AcMultiset
      • com.banda.chemistry.domain.AcRangeTranslation
      • com.banda.chemistry.domain.AcRateConstantTypeBound
      • com.banda.chemistry.domain.AcReaction (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcReactionContainer
        • com.banda.chemistry.domain.AcReactionGroup
        • com.banda.chemistry.domain.AcReactionSet
      • com.banda.chemistry.domain.AcSpeciesAction (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcSpeciesReactionAssociation
      • com.banda.chemistry.domain.AcSpeciesSetManipulationSeries
        • com.banda.chemistry.domain.AcActionSeries
        • com.banda.chemistry.domain.AcTranslationSeries (implements com.banda.chemistry.domain.AcVariableSetIF<M>)
      • com.banda.chemistry.domain.AcTask
      • com.banda.chemistry.domain.AcTranslationItem (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
      • com.banda.chemistry.domain.AcVariable<M>
        • com.banda.chemistry.domain.AcParameter (implements com.banda.function.domain.FunctionHolder<IN,OUT>)
        • com.banda.chemistry.domain.AcSpecies
          • com.banda.chemistry.domain.AcCompositeSpecies
        • com.banda.chemistry.domain.AcTranslationVariable
      • com.banda.chemistry.domain.AcVariableGroup<M> (implements com.banda.chemistry.domain.AcVariableGroupIF<M>)
        • com.banda.chemistry.domain.AcSpeciesGroup
      • com.banda.chemistry.domain.AcVariableSet<M> (implements com.banda.chemistry.domain.AcVariableSetIF<M>)
        • com.banda.chemistry.domain.AcParameterSet
        • com.banda.chemistry.domain.AcSpeciesSet
          • com.banda.chemistry.domain.AcDNAStrandSpeciesSet
      • com.banda.chemistry.domain.ArtificialChemistry
      • com.banda.chemistry.domain.EvolutionRule<TYPE>
      • com.banda.chemistry.domain.Membrane<OBJECT_TYPE>
        • com.banda.chemistry.domain.MembraneWithAtoms
        • com.banda.chemistry.domain.RewritingMembrane
  • com.banda.core.domain.dynamics.MultiRunAnalysisResult<T>
    • com.banda.chemistry.domain.AcMultiRunAnalysisResult
  • com.banda.core.domain.task.Task (implements java.io.Serializable)
    • com.banda.chemistry.task.AcCoreEvaluateTask (implements com.banda.chemistry.task.AcTaskParts.AcEvaluationHolder)
      • com.banda.chemistry.task.AcEvaluateTask (implements com.banda.chemistry.task.AcTaskParts.AcHolder, com.banda.chemistry.task.AcTaskParts.AcTaskHolder, com.banda.chemistry.task.AcTaskParts.AcTranslatedRunsHolder, com.banda.chemistry.task.AcTaskParts.AcTranslationSeriesHolder)
      • com.banda.chemistry.task.AcRunTranslateAndEvaluateTask
        • com.banda.chemistry.task.AcPerturbateTask
      • com.banda.chemistry.task.AcTranslatedRunEvaluationTask
    • com.banda.chemistry.task.AcCoreRunTask (implements com.banda.chemistry.task.AcTaskParts.AcActionSeriesHolder, com.banda.chemistry.task.AcTaskParts.AcEvaluatedActionSeriesHolder, com.banda.chemistry.task.AcTaskParts.AcHolder, com.banda.chemistry.task.AcTaskParts.AcTaskHolder)
      • com.banda.chemistry.task.AcRunTask
    • com.banda.chemistry.task.AcCoreTranslateTask (implements com.banda.chemistry.task.AcTaskParts.AcMultipleTranslationSeriesHolder)
      • com.banda.chemistry.task.AcRunAndTranslateTask
      • com.banda.chemistry.task.AcTranslateRunTask
      • com.banda.chemistry.task.AcTranslateTask (implements com.banda.chemistry.task.AcTaskParts.AcActionSeriesHolder, com.banda.chemistry.task.AcTaskParts.AcHolder, com.banda.chemistry.task.AcTaskParts.AcRunsHolder, com.banda.chemistry.task.AcTaskParts.AcTaskHolder)
    • com.banda.chemistry.task.AcMultiRunAnalysisTask (implements com.banda.chemistry.task.AcTaskParts.MultipleAcHolder, com.banda.chemistry.task.AcTaskParts.MultiRunAnalysisSpecHolder<T>)
    • com.banda.chemistry.task.AcPerformanceEvaluateTask (implements com.banda.chemistry.task.AcTaskParts.AcEvaluationHolder, com.banda.chemistry.task.AcTaskParts.AcHolder, com.banda.chemistry.task.AcTaskParts.AcMultipleActionSeriesHolder)
      • com.banda.chemistry.task.AcPerturbationPerformanceEvaluateTask
      • com.banda.chemistry.task.AcRandomRatePerformanceEvaluateTask (implements com.banda.chemistry.task.AcTaskParts.AcMultipleRateConstantTypeBoundHolder)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.banda.chemistry.BndChemistryException

Interface Hierarchy

• com.banda.chemistry.task.AcTaskParts
• com.banda.chemistry.task.AcTaskParts.AcActionSeriesHolder
• com.banda.chemistry.task.AcTaskParts.AcEvaluatedActionSeriesHolder
• com.banda.chemistry.task.AcTaskParts.AcEvaluationHolder
• com.banda.chemistry.task.AcTaskParts.AcHolder
• com.banda.chemistry.task.AcTaskParts.AcMultipleActionSeriesHolder
• com.banda.chemistry.task.AcTaskParts.AcMultipleRateConstantTypeBoundHolder
• com.banda.chemistry.task.AcTaskParts.AcMultipleTranslationSeriesHolder
• com.banda.chemistry.task.AcTaskParts.AcRunsHolder
• com.banda.chemistry.task.AcTaskParts.AcTaskHolder
• com.banda.chemistry.task.AcTaskParts.AcTranslatedRunsHolder
• com.banda.chemistry.task.AcTaskParts.AcTranslationSeriesHolder
• com.banda.chemistry.task.AcTaskParts.MultipleAcHolder
• com.banda.chemistry.task.AcTaskParts.MultiRunAnalysisSpecHolder<T>
• com.banda.chemistry.domain.AcVariableGroupIF<M>
  • com.banda.chemistry.domain.AcVariableSetIF<M>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • com.banda.chemistry.task.AcCoreRunTask.AcRunStoreOption
    • com.banda.chemistry.task.IllegalStateEventHandling
    • com.banda.chemistry.task.AcCoreTranslateTask.AcTranslationStoreOption
    • com.banda.chemistry.domain.AcCompartmentChannelDirection
    • com.banda.chemistry.domain.AcSpeciesType
    • com.banda.chemistry.domain.AcEvaluationItemState
    • com.banda.chemistry.domain.UpdateAlgorithmType
    • com.banda.chemistry.domain.AcSpeciesAssociationType
    • com.banda.chemistry.domain.AcCollectiveSpeciesReactionAssociationType
    • com.banda.chemistry.domain.KineticsType
    • com.banda.chemistry.domain.AcReaction.ReactionDirection
    • com.banda.chemistry.domain.AcReactionSpeciesForbiddenRedundancy
    • com.banda.chemistry.domain.AcReactionRateConstantType