com.banda.chemistry.domain

Class AcDNAStrandSpec

java.lang.Object

com.banda.chemistry.domain.ArtificialChemistrySpec

com.banda.chemistry.domain.AcDNAStrandSpec

All Implemented Interfaces:

Serializable

public class AcDNAStrandSpec
extends ArtificialChemistrySpec

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
AcDNAStrandSpec()

Method Summary

Methods

Modifier and Type	Method and Description
Double	getComplementaryStrandsRatio()
Integer	getSingleStrandsNum()
RandomDistribution<Integer>	getUpperStrandPartialBindingDistribution()
Double	getUpperToLowerStrandRatio()
boolean	isMirrorComplementarity()
boolean	isUseGlobalOrder()
void	setComplementaryStrandsRatio(Double complementaryStrandsRatio)
void	setMirrorComplementarity(boolean mirrorComplementarity)
void	setSingleStrandsNum(Integer singleStrandsNum)
void	setUpperStrandPartialBindingDistribution(RandomDistribution<Integer> upperStrandPartialBindingDistribution)
void	setUpperToLowerStrandRatio(Double upperToLowerStrandRatio)
void	setUseGlobalOrder(boolean useGlobalOrder)

Methods inherited from class com.banda.chemistry.domain.ArtificialChemistrySpec

addAc, getAcs, getConstantSpeciesRatio, getCreatedBy, getId, getInfluxRateConstantDistribution, getInfluxRatio, getName, getOutfluxNonReactiveRateConstantDistribution, getOutfluxRateConstantDistribution, getOutfluxRatio, getRateConstantDistribution, getSpeciesForbiddenRedundancy, getTimeCreated, getVersion, hasOutfluxNonReactiveRateConstantDistribution, isIncludeReverseReactions, isOutfluxAll, removeAc, setAcs, setConstantSpeciesRatio, setCreatedBy, setId, setIncludeReverseReactions, setInfluxRateConstantDistribution, setInfluxRatio, setName, setOutfluxAll, setOutfluxNonReactiveRateConstantDistribution, setOutfluxRateConstantDistribution, setOutfluxRatio, setRateConstantDistribution, setSpeciesForbiddenRedundancy, setTimeCreated, setVersion

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AcDNAStrandSpec

public AcDNAStrandSpec()

Method Detail

getUpperToLowerStrandRatio

public Double getUpperToLowerStrandRatio()

setUpperToLowerStrandRatio

public void setUpperToLowerStrandRatio(Double upperToLowerStrandRatio)

getComplementaryStrandsRatio

public Double getComplementaryStrandsRatio()

setComplementaryStrandsRatio

public void setComplementaryStrandsRatio(Double complementaryStrandsRatio)

getUpperStrandPartialBindingDistribution

public RandomDistribution<Integer> getUpperStrandPartialBindingDistribution()

setUpperStrandPartialBindingDistribution

public void setUpperStrandPartialBindingDistribution(RandomDistribution<Integer> upperStrandPartialBindingDistribution)

isMirrorComplementarity

public boolean isMirrorComplementarity()

setMirrorComplementarity

public void setMirrorComplementarity(boolean mirrorComplementarity)

getSingleStrandsNum

public Integer getSingleStrandsNum()

setSingleStrandsNum

public void setSingleStrandsNum(Integer singleStrandsNum)

isUseGlobalOrder

public boolean isUseGlobalOrder()

setUseGlobalOrder

public void setUseGlobalOrder(boolean useGlobalOrder)