String label
Date createTime
com.banda.core.domain.um.User createdBy
AcReactionSet reactionSet
List<E> parentCompartmentAssociations
List<E> subCompartmentAssociations
Collection<E> channels
Collection<E> subChannelGroups
ArtificialChemistrySpec generatedBySpec
Long id
Long version
Integer order
AcCompartment parentCompartment
AcCompartment subCompartment
AcCompartment compartment
AcSpecies sourceSpecies
AcChannelDirection direction
Double permeability
AcSpecies targetSpecies
Long id
Long version
AcCompartment compartment
List<E> channels
Integer singleStrandsNum
Double upperToLowerStrandRatio
Double complementaryStrandsRatio
RandomDistribution<T> upperStrandPartialBindingDistribution
boolean mirrorComplementarity
boolean useGlobalOrder
com.banda.core.domain.ValueBound<E> singleStrandsNum
com.banda.core.domain.ValueBound<E> upperToLowerStrandRatio
com.banda.core.domain.ValueBound<E> complementaryStrandsRatio
com.banda.core.domain.ValueBound<E> upperStrandPartialBindingDistributionShape
com.banda.core.domain.ValueBound<E> upperStrandPartialBindingDistributionLocation
boolean useGlobalOrder
Collection<E> upperStrands
Collection<E> lowerStrands
Collection<E> fullDoubleStrands
Collection<E> partialDoubleStrands
Integer applyTime
AcInteraction action
AcEvaluatedActionSeries evaluatedActionSeries
Set<E> evaluatedSpeciesActions
Date createTime
com.banda.core.domain.um.User createdBy
AcInteractionSeries actionSeries
Set<E> evaluatedActions
Date timeCreated
com.banda.core.domain.um.User createdBy
AcCompartment compartment
AcSimulationConfig simulationConfig
AcInteractionSeries actionSeries
AcEvaluation evaluation
Integer repetitions
Double[] averagedCorrectRates
Integer length
Integer steps
Date createTime
com.banda.core.domain.um.User createdBy
Double[] evaluatedValues
AcEvaluation evaluation
AcTranslatedRun translatedRun
AcSpeciesInteraction speciesAction
AcEvaluatedAction evaluatedAction
Double value
Set<E> speciesActions
Set<E> variableAssignments
AcInteractionSeries actionSeries
AcSpeciesSet speciesSet
Collection<E> variables
Integer varSequenceNum
Collection<E> immutableSpecies
Set<E> actions
AcInteractionSeries parent
Collection<E> subActionSeries
AcInteractionVariable variable
AcInteraction action
Function<IN,OUT> settingFunction
List<E> sequence
AcItemHistoriesHolder<I extends AcItemHistory> holder
ArtificialChemistry ac
AcCompartment compartment
AcSimulationConfig simulationConfig
AcSpeciesSet speciesSet
Integer randomRateGenerationNum
Collection<E> rateConstantTypeBounds
com.banda.core.domain.um.User createdBy
AcRateConstantType rateConstantType
com.banda.core.domain.ValueBound<E> bound
String label
Integer priority
Integer sortOrder
Set<E> speciesAssociations
AcCollectiveSpeciesReactionAssociationType collectiveCatalysisType
AcCollectiveSpeciesReactionAssociationType collectiveInhibitionType
Function<IN,OUT> forwardRateFunction
Function<IN,OUT> reverseRateFunction
Double[] forwardRateConstants
Double[] reverseRateConstants
boolean enabled
AcReactionSet reactionSet
AcReactionGroup group
Integer index
AcReactionSet reactionSet
AcSpeciesSet speciesSet
List<E> groups
AcReactionToSpeciesConstraints reactionToSpeciesConstraints
AcSpeciesToReactionConstraints speciesToReactionConstraints
Double reactionsPerSpeciesRatio
AcSpeciesAssociationType reactionsPerSpeciesRatioAssocType
Integer maxReactantsNum
Integer maxProductsNum
Integer maxCatalystsNum
Integer maxInhibitorsNum
Integer minReactantsNum
Integer minProductsNum
Integer minCatalystsNum
Integer minInhibitorsNum
Long id
Long version
Date timeCreated
com.banda.core.domain.um.User createdBy
String name
ODESolverType odeSolverType
Double upperThreshold
Double lowerThreshold
Double timeStep
Double tolerance
Double fixedPointDetectionPrecision
Double fixedPointDetectionPeriodicity
Double influxScale
String structure
AcSpeciesGroup group
AcSpecies species
AcSpeciesAssociationType type
AcSpecies species
AcInteraction action
Function<IN,OUT> settingFunction
AcSpecies species
AcReaction reaction
Double stoichiometricFactor
AcSpeciesAssociationType type
Integer order
Integer varSequenceNum
AcSpeciesSet parentSpeciesSet
AcParameterSet parameterSet
Map<K,V> speciesGroupMap
Integer fixedReactantAssocsNum
Integer fixedProductAssocsNum
Integer fixedCatalystAssocsNum
Integer fixedInhibitorAssocsNum
RandomDistribution<T> randomReactantAssocsNumDistribution
RandomDistribution<T> randomProductAssocsNumDistribution
RandomDistribution<T> randomCatalystAssocsNumDistribution
RandomDistribution<T> randomInhibitorAssocsNumDistribution
Integer reactantMultiplicity
Integer speciesNum
Integer reactionNum
Integer reactantsPerReactionNumber
Integer productsPerReactionNumber
Integer catalystsPerReactionNumber
Integer inhibitorsPerReactionNumber
com.banda.core.domain.ValueBound<E> speciesNum
com.banda.core.domain.ValueBound<E> reactionNum
com.banda.core.domain.ValueBound<E> reactantsPerReactionNumber
com.banda.core.domain.ValueBound<E> productsPerReactionNumber
com.banda.core.domain.ValueBound<E> catalystsPerReactionNumber
com.banda.core.domain.ValueBound<E> inhibitorsPerReactionNumber
com.banda.core.domain.ComponentRunTrace<T,C> acRunTrace
AcTranslationSeries translationSeries
Integer fromTime
Integer toTime
AcTranslationSeries translationSeries
Set<E> translationItems
AcTranslationVariable variable
AcTranslation translation
Function<IN,OUT> translationFunction
AcTranslationVariable variable
AcSpeciesSet speciesSet
Collection<E> variables
Integer varSequenceNum
boolean variablesReferenced
Double defaultVariableValue
Set<E> translations
List<E> translatedRuns
String label
Integer sortOrder
Integer variableIndex
AcVariableSetIF<M extends AcVariable<? extends AcVariableSetIF>> parentSet
String label
Collection<E> variables
String name
Date createTime
com.banda.core.domain.um.User createdBy
Collection<E> variables
String name
Date createTime
com.banda.core.domain.um.User createdBy
AcCompartment skinCompartment
ArtificialChemistrySpec generatedBySpec
AcSimulationConfig simulationConfig
Collection<E> multiRunAnalysisResults
Long id
Long version
Date timeCreated
com.banda.core.domain.um.User createdBy
String name
RandomDistribution<T> rateConstantDistribution
boolean includeReverseReactions
AcReactionSpeciesForbiddenRedundancy speciesForbiddenRedundancy
Double influxRatio
RandomDistribution<T> influxRateConstantDistribution
Double outfluxRatio
boolean outfluxAll
RandomDistribution<T> outfluxRateConstantDistribution
RandomDistribution<T> outfluxNonReactiveRateConstantDistribution
Double constantSpeciesRatio
Collection<E> acs
Long id
Long version
Date timeCreated
com.banda.core.domain.um.User createdBy
String name
com.banda.core.domain.ValueBound<E> influxRatio
com.banda.core.domain.ValueBound<E> outfluxRatio
com.banda.core.domain.ValueBound<E> constantSpeciesRatio
com.banda.core.domain.ValueBound<E> rateConstantDistributionShape
com.banda.core.domain.ValueBound<E> rateConstantDistributionLocation
com.banda.core.domain.ValueBound<E> influxRateConstantDistributionShape
com.banda.core.domain.ValueBound<E> influxRateConstantDistributionLocation
com.banda.core.domain.ValueBound<E> outfluxRateConstantDistributionShape
com.banda.core.domain.ValueBound<E> outfluxRateConstantDistributionLocation
com.banda.core.domain.ValueBound<E> outfluxNonReactiveRateConstantDistributionShape
com.banda.core.domain.ValueBound<E> outfluxNonReactiveRateConstantDistributionLocation
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